Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-dinJ/YafQ-RelB
Location 662326..662857 Replicon chromosome
Accession NZ_CP006696
Organism Xylella fastidiosa subsp. sandyi Ann-1

Toxin (Protein)


Gene name relE Uniprot ID A0A060GYI0
Locus tag D934_RS02760 Protein ID WP_020853121.1
Coordinates 662576..662857 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID A0A060H1U9
Locus tag D934_RS02755 Protein ID WP_020853122.1
Coordinates 662326..662589 (+) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D934_RS02730 657552..658730 - 1179 WP_020850953.1 phage tail sheath family protein -
D934_RS02735 658795..660387 - 1593 WP_024748652.1 tail fiber domain-containing protein -
D934_RS02740 660395..660952 - 558 WP_020852723.1 phage tail protein I -
D934_RS02745 660945..661838 - 894 WP_020850956.1 baseplate J/gp47 family protein -
D934_RS02750 661838..662176 - 339 WP_004088650.1 GPW/gp25 family protein -
D934_RS02755 662326..662589 + 264 WP_020853122.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
D934_RS02760 662576..662857 + 282 WP_020853121.1 type II toxin-antitoxin system YafQ family toxin Toxin
D934_RS02765 662894..663481 - 588 WP_024748577.1 phage baseplate assembly protein V -
D934_RS02770 663478..664020 - 543 WP_020850961.1 hypothetical protein -
D934_RS02775 663996..664517 - 522 WP_020850962.1 hypothetical protein -
D934_RS02780 664514..664837 - 324 WP_020850963.1 hypothetical protein -
D934_RS02785 664837..665097 - 261 WP_020850964.1 hypothetical protein -
D934_RS02790 665115..666989 - 1875 WP_020850965.1 phage major capsid protein -
D934_RS02795 666986..667618 - 633 WP_020850966.1 phage portal protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 635034..671730 36696


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-70)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10892.32 Da        Isoelectric Point: 7.2205

>T45424 WP_020853121.1 NZ_CP006696:662576-662857 [Xylella fastidiosa subsp. sandyi Ann-1]
MRRISQTGQFKRDYKREAKGQHRATLDEELIHVVEALACDHPLEPRHHDHALTGDWKDHRDCHIKPDLVLIYRKPDNETL
QLVRIGSHSELGL

Download         Length: 282 bp

>T45424 NZ_CP006696:662576-662857 [Xylella fastidiosa subsp. sandyi Ann-1]
ATGCGGAGGATTAGTCAGACTGGCCAGTTCAAGCGCGACTACAAGCGCGAAGCTAAGGGCCAGCATCGCGCCACGCTTGA
TGAGGAACTAATACACGTCGTAGAAGCCTTGGCCTGTGATCATCCGTTGGAGCCACGCCACCACGATCACGCACTAACTG
GCGACTGGAAAGATCACCGTGATTGCCACATCAAACCCGACTTGGTACTGATATACCGGAAGCCCGACAACGAGACATTG
CAGCTCGTGCGGATTGGCTCACACAGCGAACTAGGCTTGTGA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9422.90 Da        Isoelectric Point: 6.7245

>AT45424 WP_020853122.1 NZ_CP006696:662326-662589 [Xylella fastidiosa subsp. sandyi Ann-1]
MSANAVVRARVDAHIKEEASTVLATMGLSVSDAFRMMLTRIAREKALPFEPLVPNATTIAAMREARAGHLKSFNSIEGLM
ADLHAED

Download         Length: 264 bp

>AT45424 NZ_CP006696:662326-662589 [Xylella fastidiosa subsp. sandyi Ann-1]
ATGTCTGCAAACGCAGTTGTCCGTGCTCGCGTTGACGCGCACATCAAAGAAGAAGCATCAACCGTACTGGCGACGATGGG
CCTAAGCGTGTCTGACGCGTTCCGTATGATGCTGACCCGCATTGCCCGCGAGAAGGCGCTGCCGTTCGAGCCGCTGGTGC
CGAACGCAACCACTATCGCAGCCATGCGCGAAGCCCGCGCTGGTCACCTCAAGAGCTTTAACAGCATTGAGGGGCTCATG
GCGGACTTGCATGCGGAGGATTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A060GYI0

Antitoxin

Source ID Structure
AlphaFold DB A0A060H1U9

References