Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1781207..1781355 | Replicon | chromosome |
| Accession | NZ_CP006692 | ||
| Organism | Salmonella bongori serovar 48:z41:-- str. RKS3044 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1781214..1781317 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1781207..1781355 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N643_RS08285 | 1777378..1778100 | - | 723 | WP_038391780.1 | type III secretion system guanine nucleotide exchange factor SopE2 | - |
| N643_RS08290 | 1778726..1779202 | + | 477 | WP_038391782.1 | hypothetical protein | - |
| N643_RS08295 | 1779787..1780929 | + | 1143 | WP_038391785.1 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| - | 1781207..1781355 | + | 149 | - | - | Antitoxin |
| - | 1781214..1781317 | - | 104 | - | - | Toxin |
| N643_RS08305 | 1781461..1781811 | - | 351 | WP_038391791.1 | YebY family protein | - |
| N643_RS08310 | 1781828..1782703 | - | 876 | WP_077915695.1 | copper homeostasis membrane protein CopD | - |
| N643_RS08315 | 1782704..1783078 | - | 375 | WP_000885911.1 | CopC domain-containing protein YobA | - |
| N643_RS08320 | 1783217..1783447 | + | 231 | WP_000856226.1 | DNA polymerase III subunit theta | - |
| N643_RS08325 | 1783555..1784211 | + | 657 | WP_038391795.1 | carbon-nitrogen hydrolase family protein | - |
| N643_RS08330 | 1784235..1784924 | + | 690 | WP_000944290.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T45406 NZ_CP006692:c1781317-1781214 [Salmonella bongori serovar 48:z41:-- str. RKS3044]
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 149 bp
>AT45406 NZ_CP006692:1781207-1781355 [Salmonella bongori serovar 48:z41:-- str. RKS3044]
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
