Detailed information of TA system TA045396

Bioinformatically predicted

Overview

TA module

• Type: VIII
• Classification (family/domain): SdsR-RyeA/-
• Location: 3666144..3666254
• Replicon: chromosome
• Accession: NZ_CP006664
• Organism: Edwardsiella anguillarum ET080813 strain 80813

Toxin (RNA)

Gene name	SdsR
Locus tag	-
Coordinates	3666146..3666247 (-)

Antitoxin (RNA)

Gene name	RyeA
Locus tag	-
Coordinates	3666144..3666254 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
ETEE_RS16525	3661904..3662185	-	282	WP_015871319.1	type II toxin-antitoxin system RelE/ParE family toxin	-
ETEE_RS16530	3662175..3662426	-	252	WP_015871318.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
ETEE_RS16535	3662714..3663181	+	468	Protein_3291	hypothetical protein	-
ETEE_RS16540	3663192..3663539	+	348	WP_144242832.1	hypothetical protein	-
ETEE_RS16545	3663911..3665785	+	1875	WP_034165826.1	PhoX family phosphatase	-
-	3666144..3666254	+	111	-	-	Antitoxin
-	3666146..3666247	-	102	-	-	Toxin
ETEE_RS16550	3667027..3670386	+	3360	WP_081926440.1	autotransporter outer membrane beta-barrel domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Prophage	-	-	3629210..3689929	60719

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Sequences

Toxin

Nucleotide

• Length: 102 bp

>T45396 NZ_CP006664:c3666247-3666146 [Edwardsiella anguillarum ET080813]
GCAAGGCATTCAATGCCTGCATAATGCCAACTTTTAGCGCACGGCTCTCCATAAGAGCCATTCCCCTAGACCTGACACAG
GAATCGTGCCAGGTCTTTTTTT

Antitoxin

Nucleotide

• Length: 111 bp

>AT45396 NZ_CP006664:3666144-3666254 [Edwardsiella anguillarum ET080813]
ATAAAAAAAGACCTGGCACGATTCCTGTGTCAGGTCTAGGGGAATGGCTCTTATGGAGAGCCGTGCGCTAAAAGTTGGCA
TTATGCAGGCATTGAATGCCTTGCTCTTTAA

Structures

Antitoxin

Antitoxin