Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1885006..1885277 | Replicon | chromosome |
| Accession | NZ_CP006636 | ||
| Organism | Escherichia coli PCN061 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1885044..1885147 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1885006..1885277 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCN061_RS09535 | 1882163..1883602 | + | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PCN061_RS09540 | 1883720..1883956 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| PCN061_RS09545 | 1884061..1884252 | + | 192 | WP_001338167.1 | YebW family protein | - |
| PCN061_RS09550 | 1884253..1884909 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 1885006..1885277 | + | 272 | - | - | Antitoxin |
| - | 1885044..1885147 | - | 104 | - | - | Toxin |
| PCN061_RS09560 | 1885305..1885646 | - | 342 | WP_000976472.1 | YebY family protein | - |
| PCN061_RS09565 | 1885659..1886531 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| PCN061_RS09570 | 1886535..1886909 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| PCN061_RS09575 | 1887048..1887278 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PCN061_RS09580 | 1887380..1888036 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| PCN061_RS09585 | 1888060..1888722 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1876776..1908267 | 31491 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T45336 NZ_CP006636:c1885147-1885044 [Escherichia coli PCN061]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT45336 NZ_CP006636:1885006-1885277 [Escherichia coli PCN061]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
