Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2030720..2030988 | Replicon | chromosome |
| Accession | NZ_CP006632 | ||
| Organism | Escherichia coli PCN033 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2030758..2030861 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2030720..2030988 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PPECC33_RS09985 | 2027877..2029316 | + | 1440 | WP_001366375.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PPECC33_RS09990 | 2029434..2029670 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| PPECC33_RS09995 | 2029775..2029966 | + | 192 | WP_001296140.1 | YebW family protein | - |
| PPECC33_RS10000 | 2029967..2030623 | - | 657 | WP_000812730.1 | protein-serine/threonine phosphatase | - |
| - | 2030720..2030988 | + | 269 | - | - | Antitoxin |
| - | 2030758..2030861 | - | 104 | - | - | Toxin |
| PPECC33_RS10010 | 2031018..2031359 | - | 342 | WP_000976471.1 | YebY family protein | - |
| PPECC33_RS10015 | 2031372..2032244 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| PPECC33_RS10020 | 2032248..2032622 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| PPECC33_RS10025 | 2032761..2032991 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PPECC33_RS10030 | 2033093..2033749 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| PPECC33_RS10035 | 2033773..2034435 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2014169..2054782 | 40613 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T45303 NZ_CP006632:c2030861-2030758 [Escherichia coli PCN033]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT45303 NZ_CP006632:2030720-2030988 [Escherichia coli PCN033]
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGGGGTCATTAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAAGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGGGGTCATTAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
