Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2275745..2275897 | Replicon | chromosome |
| Accession | NZ_CP006580 | ||
| Organism | Enterobacter ludwigii strain P101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2275780..2275883 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2275745..2275897 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M942_RS11180 | 2272229..2272891 | - | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
| M942_RS11185 | 2272916..2273566 | - | 651 | WP_025203854.1 | carbon-nitrogen hydrolase family protein | - |
| M942_RS11190 | 2273676..2273906 | - | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| M942_RS11195 | 2274044..2274415 | + | 372 | WP_020883407.1 | CopC domain-containing protein YobA | - |
| M942_RS11200 | 2274417..2275286 | + | 870 | WP_025203855.1 | copper homeostasis membrane protein CopD | - |
| M942_RS11205 | 2275303..2275641 | + | 339 | WP_025203856.1 | YebY family protein | - |
| - | 2275745..2275897 | - | 153 | - | - | Antitoxin |
| - | 2275780..2275883 | + | 104 | - | - | Toxin |
| M942_RS11210 | 2276048..2276989 | - | 942 | WP_025203857.1 | VirK/YbjX family protein | - |
| M942_RS11215 | 2277157..2277801 | + | 645 | WP_025203858.1 | protein-serine/threonine phosphatase | - |
| M942_RS11220 | 2277836..2278075 | - | 240 | WP_020883412.1 | YebV family protein | - |
| M942_RS11225 | 2278181..2279623 | - | 1443 | WP_025203859.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T45269 NZ_CP006580:2275780-2275883 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT45269 NZ_CP006580:c2275897-2275745 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
