Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/PIN-AbrB |
| Location | 56881..57521 | Replicon | chromosome |
| Accession | NZ_CP006577 | ||
| Organism | Archaeoglobus fulgidus DSM 8774 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | AFULGI_RS00275 | Protein ID | WP_010877579.1 |
| Coordinates | 56881..57294 (-) | Length | 138 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | A0A075W906 |
| Locus tag | AFULGI_RS13005 | Protein ID | WP_052270455.1 |
| Coordinates | 57291..57521 (-) | Length | 77 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AFULGI_RS00230 (AFULGI_00000480) | 52578..52976 | - | 399 | WP_010877569.1 | DUF126 domain-containing protein | - |
| AFULGI_RS00235 (AFULGI_00000490) | 52997..53137 | - | 141 | WP_010877570.1 | DNA-directed RNA polymerase subunit P | - |
| AFULGI_RS00240 (AFULGI_00000500) | 53141..53392 | - | 252 | WP_010877571.1 | 50S ribosomal protein L37Ae | - |
| AFULGI_RS00245 (AFULGI_00000510) | 53431..53955 | - | 525 | WP_048094782.1 | PUA domain-containing protein | - |
| AFULGI_RS00250 (AFULGI_00000520) | 53922..54326 | - | 405 | WP_048094785.1 | hypothetical protein | - |
| AFULGI_RS00255 (AFULGI_00000530) | 54424..54705 | + | 282 | WP_010877574.1 | MazG nucleotide pyrophosphohydrolase domain-containing protein | - |
| AFULGI_RS00260 (AFULGI_00000540) | 54705..55295 | + | 591 | WP_048094788.1 | dTMP kinase | - |
| AFULGI_RS00265 (AFULGI_00000550) | 55269..56108 | - | 840 | WP_048064160.1 | CBS domain-containing protein | - |
| AFULGI_RS13275 | 56212..56505 | - | 294 | Protein_55 | hypothetical protein | - |
| AFULGI_RS13575 (AFULGI_00000570) | 56632..56787 | - | 156 | WP_156029468.1 | hypothetical protein | - |
| AFULGI_RS00275 (AFULGI_00000580) | 56881..57294 | - | 414 | WP_010877579.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| AFULGI_RS13005 (AFULGI_00000590) | 57291..57521 | - | 231 | WP_052270455.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| AFULGI_RS00285 (AFULGI_00000600) | 57605..58291 | - | 687 | WP_010877581.1 | CRISPR-associated protein Cas5 | - |
| AFULGI_RS00290 (AFULGI_00000610) | 58303..59256 | - | 954 | WP_010877582.1 | DevR family CRISPR-associated autoregulator | - |
| AFULGI_RS00295 (AFULGI_00000620) | 59257..59619 | - | 363 | WP_010877583.1 | hypothetical protein | - |
| AFULGI_RS00300 (AFULGI_00000630) | 59606..60658 | - | 1053 | WP_231487532.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 138 a.a. Molecular weight: 16415.97 Da Isoelectric Point: 4.5216
>T45260 WP_010877579.1 NZ_CP006577:c57294-56881 [Archaeoglobus fulgidus DSM 8774]
MKIFLDANYLIYLKYSESDEIFDYCVNLLRKIEKYDLVTNMLAIDEVIWILNRKYKIELDEVFEYLDRLLSFLRVVPIEA
EDYDLMKEFMLGYNLKPSDSLHLSSMRRHGVSVIVSEDSDFDRVDWVKRVWIGRGDV
MKIFLDANYLIYLKYSESDEIFDYCVNLLRKIEKYDLVTNMLAIDEVIWILNRKYKIELDEVFEYLDRLLSFLRVVPIEA
EDYDLMKEFMLGYNLKPSDSLHLSSMRRHGVSVIVSEDSDFDRVDWVKRVWIGRGDV
Download Length: 414 bp
>T45260 NZ_CP006577:c57294-56881 [Archaeoglobus fulgidus DSM 8774]
ATGAAAATTTTTCTGGATGCCAATTATCTGATTTACCTGAAGTACTCTGAAAGTGACGAAATCTTTGATTACTGCGTAAA
CCTTCTCAGAAAAATTGAAAAATACGACCTGGTGACTAACATGCTCGCAATCGATGAGGTTATCTGGATACTCAACAGAA
AGTATAAAATCGAGCTTGATGAGGTGTTTGAGTATCTTGACAGACTTTTAAGCTTTCTCAGGGTTGTTCCGATTGAAGCT
GAGGATTACGACCTCATGAAGGAGTTCATGCTTGGATACAACCTCAAACCCTCGGACTCTCTGCATCTTTCGAGCATGAG
GAGACATGGGGTGAGTGTGATAGTCTCGGAGGATTCCGACTTTGACAGGGTGGATTGGGTTAAGAGGGTGTGGATTGGCA
GAGGTGATGTTTGA
ATGAAAATTTTTCTGGATGCCAATTATCTGATTTACCTGAAGTACTCTGAAAGTGACGAAATCTTTGATTACTGCGTAAA
CCTTCTCAGAAAAATTGAAAAATACGACCTGGTGACTAACATGCTCGCAATCGATGAGGTTATCTGGATACTCAACAGAA
AGTATAAAATCGAGCTTGATGAGGTGTTTGAGTATCTTGACAGACTTTTAAGCTTTCTCAGGGTTGTTCCGATTGAAGCT
GAGGATTACGACCTCATGAAGGAGTTCATGCTTGGATACAACCTCAAACCCTCGGACTCTCTGCATCTTTCGAGCATGAG
GAGACATGGGGTGAGTGTGATAGTCTCGGAGGATTCCGACTTTGACAGGGTGGATTGGGTTAAGAGGGTGTGGATTGGCA
GAGGTGATGTTTGA
Antitoxin
Download Length: 77 a.a. Molecular weight: 8649.22 Da Isoelectric Point: 6.3756
>AT45260 WP_052270455.1 NZ_CP006577:c57521-57291 [Archaeoglobus fulgidus DSM 8774]
MVKLKVKVGAKGQVVIPKVIRDKLGIKPDDVLLVDEEGGKIVIEKQDIDDFIEWVKKTRKKVAGEVYRIALEDEFE
MVKLKVKVGAKGQVVIPKVIRDKLGIKPDDVLLVDEEGGKIVIEKQDIDDFIEWVKKTRKKVAGEVYRIALEDEFE
Download Length: 231 bp
>AT45260 NZ_CP006577:c57521-57291 [Archaeoglobus fulgidus DSM 8774]
ATGGTAAAACTCAAGGTTAAAGTAGGTGCGAAGGGGCAGGTCGTGATTCCAAAGGTTATAAGGGACAAGCTGGGAATAAA
GCCAGATGATGTCCTTCTTGTGGATGAAGAGGGCGGGAAGATAGTGATTGAAAAGCAGGACATCGATGATTTCATTGAGT
GGGTCAAAAAAACCAGAAAGAAGGTTGCGGGCGAGGTTTACAGAATTGCATTGGAGGATGAGTTCGAATGA
ATGGTAAAACTCAAGGTTAAAGTAGGTGCGAAGGGGCAGGTCGTGATTCCAAAGGTTATAAGGGACAAGCTGGGAATAAA
GCCAGATGATGTCCTTCTTGTGGATGAAGAGGGCGGGAAGATAGTGATTGAAAAGCAGGACATCGATGATTTCATTGAGT
GGGTCAAAAAAACCAGAAAGAAGGTTGCGGGCGAGGTTTACAGAATTGCATTGGAGGATGAGTTCGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|