Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1949767..1949850 | Replicon | chromosome |
| Accession | NZ_CP006569 | ||
| Organism | Sodalis praecaptivus strain HS1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1949767..1949847 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1949767..1949850 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SANT_RS08630 | 1945287..1945994 | - | 708 | WP_025421894.1 | exodeoxyribonuclease X | - |
| SANT_RS08635 | 1946565..1946792 | - | 228 | WP_025421895.1 | DNA polymerase III subunit theta | - |
| SANT_RS08640 | 1947160..1947675 | + | 516 | WP_025421896.1 | non-heme ferritin | - |
| SANT_RS08645 | 1947930..1948310 | + | 381 | WP_025421897.1 | CopC domain-containing protein YobA | - |
| SANT_RS08650 | 1948311..1949201 | + | 891 | WP_038668403.1 | copper homeostasis membrane protein CopD | - |
| SANT_RS08655 | 1949241..1949594 | + | 354 | WP_025421899.1 | YebY family protein | - |
| - | 1949767..1949847 | + | 81 | - | - | Toxin |
| - | 1949767..1949850 | - | 84 | - | - | Antitoxin |
| SANT_RS08660 | 1950922..1951623 | - | 702 | WP_025421900.1 | PAS and helix-turn-helix domain-containing protein | - |
| SANT_RS08665 | 1951965..1952663 | - | 699 | WP_025421901.1 | PAS and helix-turn-helix domain-containing protein | - |
| SANT_RS08670 | 1953702..1954415 | - | 714 | WP_025421902.1 | PAS and helix-turn-helix domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1942105..1959640 | 17535 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T45246 NZ_CP006569:1949767-1949847 [Sodalis praecaptivus]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATATAGGAATCGTATTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATATAGGAATCGTATTCGGTCTTTTTT
T
Antitoxin
Download Length: 84 bp
>AT45246 NZ_CP006569:c1949850-1949767 [Sodalis praecaptivus]
GATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATT
GATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATT
