Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 5212141..5212638 Replicon chromosome
Accession NZ_CP006027
Organism Escherichia coli O145:H28 str. RM13514

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag ECRM13514_RS26705 Protein ID WP_001173343.1
Coordinates 5212465..5212638 (+) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag ECRM13514_RS26700 Protein ID WP_000398619.1
Coordinates 5212141..5212437 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ECRM13514_RS26675 5208872..5209591 - 720 WP_000611288.1 two-component system response regulator DcuR -
ECRM13514_RS26680 5209588..5211219 - 1632 WP_025404502.1 sensor histidine kinase -
ECRM13514_RS26685 5211400..5211630 + 231 WP_000371704.1 (4Fe-4S)-binding protein -
ECRM13514_RS26690 5211642..5211914 + 273 WP_000405653.1 N-acetyltransferase -
ECRM13514_RS26700 5212141..5212437 + 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
ECRM13514_RS26705 5212465..5212638 + 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
ECRM13514_RS26710 5212757..5214274 - 1518 WP_001295074.1 lysine--tRNA ligase -
ECRM13514_RS26715 5214511..5215968 - 1458 WP_000856822.1 dipeptide/tripeptide permease DtpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T45190 WP_001173343.1 NZ_CP006027:5212465-5212638 [Escherichia coli O145:H28 str. RM13514]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

>T45190 NZ_CP006027:5212465-5212638 [Escherichia coli O145:H28 str. RM13514]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT45190 WP_000398619.1 NZ_CP006027:5212141-5212437 [Escherichia coli O145:H28 str. RM13514]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp

>AT45190 NZ_CP006027:5212141-5212437 [Escherichia coli O145:H28 str. RM13514]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCTTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAATT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GACTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References