Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4302616..4302884 | Replicon | chromosome |
| Accession | NZ_CP005930 | ||
| Organism | Escherichia coli APEC IMT5155 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4302744..4302846 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4302616..4302884 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L282_RS21515 | 4299170..4299832 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| L282_RS21520 | 4299855..4300511 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| L282_RS21525 | 4300613..4300843 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| L282_RS21530 | 4300982..4301356 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| L282_RS21535 | 4301360..4302232 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| L282_RS21540 | 4302245..4302586 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 4302616..4302884 | - | 269 | - | - | Antitoxin |
| - | 4302744..4302846 | + | 103 | - | - | Toxin |
| L282_RS21550 | 4302981..4303637 | + | 657 | Protein_4061 | protein-serine/threonine phosphatase | - |
| L282_RS21555 | 4303638..4303829 | - | 192 | WP_001296140.1 | YebW family protein | - |
| L282_RS21560 | 4303934..4304170 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| L282_RS21565 | 4304288..4305727 | - | 1440 | WP_039267996.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T45116 NZ_CP005930:4302744-4302846 [Escherichia coli APEC IMT5155]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT45116 NZ_CP005930:c4302884-4302616 [Escherichia coli APEC IMT5155]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
