Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2908562..2908730 | Replicon | chromosome |
| Accession | NZ_CP004887 | ||
| Organism | Klebsiella michiganensis HKOPL1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2908620..2908723 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2908562..2908730 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J415_RS13635 | 2903689..2905749 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| J415_RS13640 | 2905756..2906415 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| J415_RS13645 | 2906494..2906724 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| J415_RS13650 | 2906860..2907234 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| J415_RS13655 | 2907239..2908108 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| J415_RS13660 | 2908125..2908463 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2908562..2908730 | - | 169 | - | - | Antitoxin |
| - | 2908620..2908723 | + | 104 | - | - | Toxin |
| J415_RS13665 | 2908848..2909807 | - | 960 | WP_014229836.1 | spore coat U domain-containing protein | - |
| J415_RS13670 | 2909822..2912152 | - | 2331 | WP_014229835.1 | fimbria/pilus outer membrane usher protein | - |
| J415_RS13675 | 2912155..2912919 | - | 765 | WP_014229834.1 | molecular chaperone | - |
| J415_RS13680 | 2912938..2913456 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T45051 NZ_CP004887:2908620-2908723 [Klebsiella michiganensis HKOPL1]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT45051 NZ_CP004887:c2908730-2908562 [Klebsiella michiganensis HKOPL1]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
