Detailed information of TA system TA044941

Bioinformatically predicted

Overview

TA module

• Type: VIII
• Classification (family/domain): SdsR-RyeA/-
• Location: 1926337..1926571
• Replicon: chromosome
• Accession: NZ_CP004057
• Organism: Shigella flexneri Shi06HN006 isolate Human

Toxin (RNA)

Gene name	SdsR
Locus tag	-
Coordinates	1926338..1926441 (-)

Antitoxin (RNA)

Gene name	RyeA
Locus tag	-
Coordinates	1926337..1926571 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
SFYV_RS10640	1921769..1922236	-	468	Protein_1933	DNA-binding transcriptional regulator PgrR	-
SFYV_RS10645	1922300..1922610	+	311	Protein_1934	transposase	-
SFYV_RS26455	1922653..1923862	-	1210	Protein_1935	IS3 family transposase	-
SFYV_RS10665	1923917..1924765	+	849	Protein_1936	IS3-like element IS600 family transposase	-
SFYV_RS26460	1924882..1925163	+	282	WP_005127484.1	excisionase	-
SFYV_RS29340	1925129..1926206	+	1078	Protein_1938	phage integrase Arm DNA-binding domain-containing protein	-
-	1926337..1926571	+	235	-	-	Antitoxin
-	1926338..1926441	-	104	-	-	Toxin
SFYV_RS10680	1926599..1926940	-	342	WP_000976476.1	YebY family protein	-
SFYV_RS26475	1926953..1927825	-	873	Protein_1940	copper homeostasis membrane protein CopD	-
SFYV_RS10695	1927829..1928203	-	375	WP_000168747.1	CopC domain-containing protein YobA	-
SFYV_RS10700	1928342..1928572	+	231	WP_000916763.1	DNA polymerase III subunit theta	-
SFYV_RS10705	1928674..1929330	+	657	Protein_1943	carbon-nitrogen hydrolase family protein	-
SFYV_RS10710	1929354..1930016	+	663	WP_000944268.1	exodeoxyribonuclease X	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Sequences

Toxin

Nucleotide

• Length: 104 bp

>T44941 NZ_CP004057:c1926441-1926338 [Shigella flexneri Shi06HN006]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT

Antitoxin

Nucleotide

• Length: 235 bp

>AT44941 NZ_CP004057:1926337-1926571 [Shigella flexneri Shi06HN006]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGCTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Antitoxin