Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1967517..1967662 | Replicon | chromosome |
| Accession | NZ_CP003999 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae Kp13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1967553..1967655 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1967517..1967662 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KP13_RS10470 | 1962647..1964707 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KP13_RS10475 | 1964711..1965370 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KP13_RS10480 | 1965449..1965679 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KP13_RS10485 | 1965792..1966166 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KP13_RS10490 | 1966170..1967039 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| KP13_RS10495 | 1967056..1967394 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1967517..1967662 | - | 146 | - | - | Antitoxin |
| - | 1967553..1967655 | + | 103 | - | - | Toxin |
| KP13_RS30920 | 1968030..1968173 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KP13_RS10505 | 1968278..1969246 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KP13_RS10510 | 1969403..1970056 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| KP13_RS10515 | 1970053..1970244 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KP13_RS10520 | 1970342..1970581 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KP13_RS10525 | 1970697..1972130 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T44879 NZ_CP003999:1967553-1967655 [Klebsiella pneumoniae subsp. pneumoniae Kp13]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT44879 NZ_CP003999:c1967662-1967517 [Klebsiella pneumoniae subsp. pneumoniae Kp13]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
