44714

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/VapC-PHD
Location 3813192..3813877 Replicon chromosome
Accession NZ_CP002882
Organism Mycobacterium tuberculosis BT2

Toxin (Protein)


Gene name vapC Uniprot ID G0TIR9
Locus tag HKBT2_RS17955 Protein ID WP_003417998.1
Coordinates 3813467..3813877 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag HKBT2_RS17950 Protein ID WP_180895138.1
Coordinates 3813192..3813470 (+) Length 93 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HKBT2_RS17930 3809181..3810782 - 1602 WP_003417969.1 FAD/NAD(P)-binding protein -
HKBT2_RS17935 3810799..3811503 - 705 WP_003417980.1 dTDP-4-amino-4,6-dideoxyglucose formyltransferase -
HKBT2_RS17940 3811621..3812187 - 567 WP_003417984.1 TetR/AcrR family transcriptional regulator -
HKBT2_RS17945 3812249..3813136 + 888 WP_003900050.1 alpha-ketoglutarate-dependent sulfate ester dioxygenase -
HKBT2_RS17950 3813192..3813470 + 279 WP_180895138.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
HKBT2_RS17955 3813467..3813877 + 411 WP_003417998.1 type II toxin-antitoxin system VapC family toxin Toxin
HKBT2_RS17960 3813910..3815646 - 1737 WP_003418002.1 cholesterol oxidase -
HKBT2_RS17965 3815702..3816829 - 1128 WP_003418005.1 GuaB3 family IMP dehydrogenase-related protein -
HKBT2_RS17970 3816849..3818438 - 1590 WP_003901630.1 IMP dehydrogenase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(2-118)

Antitoxin

(3-58)


Sequences


Toxin        


Download         Length: 137 a.a.        Molecular weight: 14695.84 Da        Isoelectric Point: 5.1784

>T44714 WP_003417998.1 NZ_CP002882:3813467-3813877 [Mycobacterium tuberculosis BT2]
VIYMDTSALTKLLISEPETTELRTWLTAQSGQGEDAATSTLGRVELMRVVARYGQPGQTERARYLLDGLDILPLTEPVIG
LAETIGPATLRSLDAIHLAAAAQIKRELTAFVTYDHRLLSGCREVGFVTASPGAVR

Download         Length: 411 bp

>T44714 NZ_CP002882:3813467-3813877 [Mycobacterium tuberculosis BT2]
GTGATCTATATGGACACCTCGGCCCTGACTAAGCTGCTCATCTCCGAGCCCGAGACGACCGAACTGCGGACATGGCTGAC
CGCGCAAAGCGGCCAGGGCGAGGACGCGGCGACAAGCACCCTTGGCCGGGTCGAGTTGATGAGAGTCGTTGCCCGATACG
GACAACCAGGCCAAACTGAGCGTGCGCGTTACCTACTCGACGGGCTCGACATCCTCCCGCTCACCGAACCGGTGATCGGT
CTAGCTGAAACGATCGGACCGGCCACCCTACGTTCTCTCGACGCGATTCACCTCGCGGCCGCAGCCCAGATCAAGCGGGA
ACTGACAGCCTTCGTCACCTACGACCACCGATTGTTGAGCGGATGCCGTGAGGTCGGCTTCGTCACCGCCTCACCCGGCG
CAGTCCGGTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10227.70 Da        Isoelectric Point: 8.0222

>AT44714 WP_180895138.1 NZ_CP002882:3813192-3813470 [Mycobacterium tuberculosis BT2]
VEAIGIRELRQHASRYLARVEAGEELGVTNKGRLVARLIPVQAAERSREALIESGVLIPARRPQNLLDVTAEPARGCKRT
LSDVLNEMRDEQ

Download         Length: 279 bp

>AT44714 NZ_CP002882:3813192-3813470 [Mycobacterium tuberculosis BT2]
GTGGAGGCAATCGGAATCCGAGAACTAAGACAGCACGCATCGCGATACCTCGCCCGGGTTGAAGCCGGCGAGGAACTTGG
CGTCACCAACAAAGGAAGACTTGTGGCCCGACTCATCCCGGTGCAGGCCGCGGAGCGTTCTCGCGAAGCCCTGATTGAAT
CAGGTGTCCTGATTCCGGCTCGTCGTCCACAAAACCTTCTCGACGTCACCGCCGAACCGGCGCGCGGCTGCAAGCGCACC
CTGTCCGATGTTCTCAACGAAATGCGCGACGAGCAGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB G0TIR9


Antitoxin

Source ID Structure

References