44624

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 1960597..1961057 Replicon chromosome
Accession NZ_CP002871
Organism Mycobacterium tuberculosis HKBS1

Toxin (Protein)


Gene name vapC Uniprot ID G0TKL9
Locus tag HKBS1_RS09135 Protein ID WP_003898996.1
Coordinates 1960809..1961057 (+) Length 83 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ30
Locus tag HKBS1_RS09130 Protein ID WP_003408528.1
Coordinates 1960597..1960809 (+) Length 71 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HKBS1_RS09115 1957075..1958262 - 1188 WP_003898992.1 nitrate transporter NarK -
HKBS1_RS09120 1958549..1958833 + 285 WP_003408522.1 DUF1876 domain-containing protein -
HKBS1_RS09125 1958847..1960529 - 1683 WP_003901239.1 SulP family inorganic anion transporter -
HKBS1_RS09130 1960597..1960809 + 213 WP_003408528.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
HKBS1_RS09135 1960809..1961057 + 249 WP_003898996.1 type II toxin-antitoxin system VapC family toxin Toxin
HKBS1_RS09140 1961065..1961802 + 738 WP_003898997.1 hypothetical protein -
HKBS1_RS09145 1961896..1963596 + 1701 WP_003898998.1 serine/threonine protein kinase PknE -
HKBS1_RS09150 1963881..1964282 - 402 WP_003408538.1 hypothetical protein -
HKBS1_RS09155 1964272..1964883 - 612 WP_003898999.1 isopentenyl-diphosphate Delta-isomerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Antitoxin VapB-like

(2-69)


Sequences

Toxin        


Download         Length: 83 a.a.        Molecular weight: 8884.14 Da        Isoelectric Point: 4.1074

>T44624 WP_003898996.1 NZ_CP002871:1960809-1961057 [Mycobacterium tuberculosis HKBS1]
MVIDTSALVAMLNDEPEAQRFEIAVAADHVWLMSTASYPEMATVIETRFGEPGGREPKVSGQPLLYKGDDFACIDIRAVL
AG

Download         Length: 249 bp

>T44624 NZ_CP002871:1960809-1961057 [Mycobacterium tuberculosis HKBS1]
ATGGTGATCGATACCTCTGCGCTGGTCGCGATGCTCAACGATGAACCCGAGGCGCAACGGTTCGAGATAGCCGTGGCAGC
AGACCACGTTTGGCTGATGTCGACGGCGTCATATCCGGAGATGGCGACCGTGATCGAAACACGCTTCGGGGAACCGGGGG
GACGTGAACCCAAGGTCAGCGGCCAGCCTCTCCTCTATAAGGGTGACGATTTCGCATGTATCGATATTCGCGCGGTTCTC
GCCGGCTGA

Antitoxin


Download         Length: 71 a.a.        Molecular weight: 7607.80 Da        Isoelectric Point: 9.3146

>AT44624 WP_003408528.1 NZ_CP002871:1960597-1960809 [Mycobacterium tuberculosis HKBS1]
MELAARMGETLTQAVVVAVREQLARRTGRTRSISLREELAAIGRRCAALPVLDTRAADTILGYDERGLPA

Download         Length: 213 bp

>AT44624 NZ_CP002871:1960597-1960809 [Mycobacterium tuberculosis HKBS1]
ATGGAATTGGCGGCTCGAATGGGCGAGACTTTGACACAAGCGGTCGTAGTTGCAGTGCGGGAGCAACTGGCCCGCCGGAC
CGGGCGCACCAGATCCATTTCGCTACGCGAGGAGTTGGCCGCCATTGGCCGGCGCTGCGCGGCCTTACCGGTGCTCGACA
CCCGAGCCGCGGACACGATTCTCGGCTACGACGAGCGCGGGTTGCCCGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TKL9

Antitoxin

Source ID Structure
AlphaFold DB A0A829CFE8

References