Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2189291..2189562 | Replicon | chromosome |
| Accession | NZ_AP028094 | ||
| Organism | Escherichia coli strain JNE132847 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2189329..2189432 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2189291..2189562 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JE76HU_RS11085 | 2186448..2187887 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JE76HU_RS11090 | 2188005..2188241 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JE76HU_RS11095 | 2188346..2188537 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JE76HU_RS11100 | 2188538..2189194 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2189291..2189562 | + | 272 | - | - | Antitoxin |
| - | 2189329..2189432 | - | 104 | - | - | Toxin |
| JE76HU_RS11105 | 2189590..2189931 | - | 342 | WP_000976492.1 | YebY family protein | - |
| JE76HU_RS11110 | 2189944..2190816 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| JE76HU_RS11115 | 2190820..2191194 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JE76HU_RS11120 | 2191333..2191563 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JE76HU_RS11125 | 2191665..2192321 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JE76HU_RS11130 | 2192345..2193007 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T44507 NZ_AP028094:c2189432-2189329 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT44507 NZ_AP028094:2189291-2189562 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
