Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3473723..3473871 | Replicon | chromosome |
| Accession | NZ_AP028050 | ||
| Organism | Phytobacter diazotrophicus strain TA9832 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3473723..3473825 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3473723..3473871 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE83_RS16750 | 3468883..3469218 | + | 336 | WP_286279607.1 | hypothetical protein | - |
| QUE83_RS16755 | 3469234..3469572 | + | 339 | WP_125124256.1 | Rrf2 family transcriptional regulator | - |
| QUE83_RS16760 | 3469711..3472218 | + | 2508 | WP_125124957.1 | exonuclease | - |
| QUE83_RS16765 | 3472283..3472555 | + | 273 | WP_107222989.1 | excisionase | - |
| QUE83_RS16770 | 3472530..3473636 | + | 1107 | WP_125124958.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3473723..3473825 | - | 103 | - | - | Toxin |
| - | 3473723..3473871 | + | 149 | - | - | Antitoxin |
| QUE83_RS16775 | 3473982..3474323 | - | 342 | WP_107222991.1 | YebY family protein | - |
| QUE83_RS16780 | 3474338..3475207 | - | 870 | WP_079496722.1 | copper homeostasis membrane protein CopD | - |
| QUE83_RS16785 | 3475209..3475583 | - | 375 | WP_071195198.1 | CopC domain-containing protein YobA | - |
| QUE83_RS16790 | 3475721..3475951 | + | 231 | WP_039078743.1 | DNA polymerase III subunit theta | - |
| QUE83_RS16795 | 3475948..3476625 | + | 678 | WP_125124959.1 | exodeoxyribonuclease X | - |
| QUE83_RS16800 | 3476622..3478682 | - | 2061 | WP_125124960.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | gtrB / hsiC1/vipB / hsiB1/vipA / flhA / cheZ / cheY / cheB / cheR / cheW / cheA / motB / motA / flhC / flhD | 3272409..3587720 | 315311 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T44439 NZ_AP028050:c3473825-3473723 [Phytobacter diazotrophicus]
GCATGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCATGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT44439 NZ_AP028050:3473723-3473871 [Phytobacter diazotrophicus]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCATGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGGCAAA
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCATGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGGCAAA
