Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3407373..3407521 | Replicon | chromosome |
| Accession | NZ_AP028041 | ||
| Organism | Phytobacter diazotrophicus strain TA9730 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3407373..3407475 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3407373..3407521 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE90_RS16420 | 3402533..3402868 | + | 336 | WP_286279607.1 | hypothetical protein | - |
| QUE90_RS16425 | 3402884..3403222 | + | 339 | WP_125124256.1 | Rrf2 family transcriptional regulator | - |
| QUE90_RS16430 | 3403361..3405868 | + | 2508 | WP_125124957.1 | exonuclease | - |
| QUE90_RS16435 | 3405933..3406205 | + | 273 | WP_107222989.1 | excisionase | - |
| QUE90_RS16440 | 3406180..3407286 | + | 1107 | WP_125124958.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3407373..3407475 | - | 103 | - | - | Toxin |
| - | 3407373..3407521 | + | 149 | - | - | Antitoxin |
| QUE90_RS16445 | 3407632..3407973 | - | 342 | WP_107222991.1 | YebY family protein | - |
| QUE90_RS16450 | 3407988..3408857 | - | 870 | WP_079496722.1 | copper homeostasis membrane protein CopD | - |
| QUE90_RS16455 | 3408859..3409233 | - | 375 | WP_071195198.1 | CopC domain-containing protein YobA | - |
| QUE90_RS16460 | 3409371..3409601 | + | 231 | WP_039078743.1 | DNA polymerase III subunit theta | - |
| QUE90_RS16465 | 3409598..3410275 | + | 678 | WP_125124959.1 | exodeoxyribonuclease X | - |
| QUE90_RS16470 | 3410272..3412332 | - | 2061 | WP_125124960.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3340839..3435365 | 94526 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T44399 NZ_AP028041:c3407475-3407373 [Phytobacter diazotrophicus]
GCATGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCATGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT44399 NZ_AP028041:3407373-3407521 [Phytobacter diazotrophicus]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCATGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGGCAAA
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCATGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGGCAAA
