Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 1875334..1876165 | Replicon | chromosome |
| Accession | NZ_AP027971 | ||
| Organism | Escherichia coli strain VE-V10-F | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | QQK73_RS09120 | Protein ID | WP_069024963.1 |
| Coordinates | 1875334..1875708 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | B3Y195 |
| Locus tag | QQK73_RS09125 | Protein ID | WP_001285585.1 |
| Coordinates | 1875797..1876165 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQK73_RS09080 (1870730) | 1870730..1871896 | + | 1167 | WP_000830163.1 | serine-type D-Ala-D-Ala carboxypeptidase DacD | - |
| QQK73_RS09085 (1872015) | 1872015..1872488 | + | 474 | WP_001105393.1 | DNA gyrase inhibitor SbmC | - |
| QQK73_RS09090 (1872686) | 1872686..1873744 | + | 1059 | WP_001200905.1 | FUSC family protein | - |
| QQK73_RS09095 (1873916) | 1873916..1874245 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| QQK73_RS09100 (1874346) | 1874346..1874480 | - | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| QQK73_RS09105 (1874600) | 1874600..1874728 | + | 129 | Protein_1781 | transposase domain-containing protein | - |
| QQK73_RS09110 (1875017) | 1875017..1875097 | - | 81 | Protein_1782 | hypothetical protein | - |
| QQK73_RS09115 (1875143) | 1875143..1875337 | - | 195 | WP_000988600.1 | DUF5983 family protein | - |
| QQK73_RS09120 (1875334) | 1875334..1875708 | - | 375 | WP_069024963.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin |
| QQK73_RS09125 (1875797) | 1875797..1876165 | - | 369 | WP_001285585.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin |
| QQK73_RS09130 (1876239) | 1876239..1876460 | - | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| QQK73_RS09135 (1876523) | 1876523..1876999 | - | 477 | WP_001186726.1 | RadC family protein | - |
| QQK73_RS09140 (1877015) | 1877015..1877494 | - | 480 | WP_000860087.1 | antirestriction protein | - |
| QQK73_RS09145 (1877576) | 1877576..1878394 | - | 819 | WP_001234629.1 | DUF932 domain-containing protein | - |
| QQK73_RS09150 (1878494) | 1878494..1878727 | - | 234 | WP_001119729.1 | DUF905 family protein | - |
| QQK73_RS09155 (1878806) | 1878806..1879261 | - | 456 | WP_000581504.1 | IrmA family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13898.90 Da Isoelectric Point: 7.1328
>T44339 WP_069024963.1 NZ_AP027971:c1875708-1875334 [Escherichia coli]
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGQYPEAK
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGQYPEAK
Download Length: 375 bp
>T44339 NZ_AP027971:c1875708-1875334 [Escherichia coli]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTCAGTATCCGGAGGCGAAATGA
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTCAGTATCCGGAGGCGAAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13593.48 Da Isoelectric Point: 6.3139
>AT44339 WP_001285585.1 NZ_AP027971:c1876165-1875797 [Escherichia coli]
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLSSCGYVYLAVYPTPEMKN
VSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLSSCGYVYLAVYPTPEMKN
Download Length: 369 bp
>AT44339 NZ_AP027971:c1876165-1875797 [Escherichia coli]
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|