Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1927935..1928206 | Replicon | chromosome |
| Accession | NZ_AP027963 | ||
| Organism | Escherichia coli strain VE-T9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1928065..1928168 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1927935..1928206 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQK52_RS09410 | 1924490..1925152 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQK52_RS09415 | 1925176..1925832 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQK52_RS09420 | 1925934..1926164 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQK52_RS09425 | 1926303..1926677 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| QQK52_RS09430 | 1926681..1927553 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QQK52_RS09435 | 1927566..1927907 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1927935..1928206 | - | 272 | - | - | Antitoxin |
| - | 1928065..1928168 | + | 104 | - | - | Toxin |
| QQK52_RS09440 | 1928303..1928959 | + | 657 | WP_284345103.1 | protein-serine/threonine phosphatase | - |
| QQK52_RS09445 | 1928960..1929151 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQK52_RS09450 | 1929256..1929492 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQK52_RS09455 | 1929610..1931049 | - | 1440 | WP_040062830.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T44308 NZ_AP027963:1928065-1928168 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT44308 NZ_AP027963:c1928206-1927935 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
