Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2128170..2128441 | Replicon | chromosome |
| Accession | NZ_AP027960 | ||
| Organism | Escherichia coli strain VE-T2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2128300..2128403 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2128170..2128441 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQK13_RS10305 | 2124726..2125388 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQK13_RS10310 | 2125411..2126067 | - | 657 | WP_021577595.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQK13_RS10315 | 2126169..2126399 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQK13_RS10320 | 2126538..2126912 | + | 375 | WP_021577594.1 | CopC domain-containing protein YobA | - |
| QQK13_RS10325 | 2126916..2127788 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| QQK13_RS10330 | 2127801..2128142 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2128170..2128441 | - | 272 | - | - | Antitoxin |
| - | 2128300..2128403 | + | 104 | - | - | Toxin |
| QQK13_RS10335 | 2128538..2129194 | + | 657 | WP_106464872.1 | protein-serine/threonine phosphatase | - |
| QQK13_RS10340 | 2129195..2129386 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQK13_RS10345 | 2129491..2129727 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQK13_RS10350 | 2129845..2131284 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T44279 NZ_AP027960:2128300-2128403 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT44279 NZ_AP027960:c2128441-2128170 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
