Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2127970..2128241 | Replicon | chromosome |
| Accession | NZ_AP027957 | ||
| Organism | Escherichia coli strain VE-T10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2128100..2128203 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2127970..2128241 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQK14_RS10320 | 2124526..2125188 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQK14_RS10325 | 2125211..2125867 | - | 657 | WP_021577595.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQK14_RS10330 | 2125969..2126199 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQK14_RS10335 | 2126338..2126712 | + | 375 | WP_021577594.1 | CopC domain-containing protein YobA | - |
| QQK14_RS10340 | 2126716..2127588 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| QQK14_RS10345 | 2127601..2127942 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2127970..2128241 | - | 272 | - | - | Antitoxin |
| - | 2128100..2128203 | + | 104 | - | - | Toxin |
| QQK14_RS10350 | 2128338..2128994 | + | 657 | WP_106464872.1 | protein-serine/threonine phosphatase | - |
| QQK14_RS10355 | 2128995..2129186 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQK14_RS10360 | 2129291..2129527 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQK14_RS10365 | 2129645..2131084 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T44246 NZ_AP027957:2128100-2128203 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT44246 NZ_AP027957:c2128241-2127970 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
