Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2028242..2028513 Replicon chromosome
Accession NZ_AP027953
Organism Escherichia coli strain VE-F5

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2028372..2028475 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2028242..2028513 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QQJ99_RS09925 2024797..2025459 - 663 WP_000944256.1 exodeoxyribonuclease X -
QQJ99_RS09930 2025483..2026139 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein YobB -
QQJ99_RS09935 2026241..2026471 - 231 WP_000916763.1 DNA polymerase III subunit theta -
QQJ99_RS09940 2026610..2026984 + 375 WP_000168747.1 CopC domain-containing protein YobA -
QQJ99_RS09945 2026988..2027860 + 873 WP_000879289.1 copper homeostasis membrane protein CopD -
QQJ99_RS09950 2027873..2028214 + 342 WP_000976476.1 YebY family protein -
- 2028242..2028513 - 272 - - Antitoxin
- 2028372..2028475 + 104 - - Toxin
QQJ99_RS09955 2028610..2029266 + 657 WP_000812724.1 protein-serine/threonine phosphatase -
QQJ99_RS09960 2029267..2029458 - 192 WP_000457842.1 YebW family protein -
QQJ99_RS09965 2029563..2029799 - 237 WP_001295499.1 YebV family protein -
QQJ99_RS09970 2029917..2031356 - 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T44219 NZ_AP027953:2028372-2028475 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT44219 NZ_AP027953:c2028513-2028242 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References