Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2037382..2037653 | Replicon | chromosome |
| Accession | NZ_AP027946 | ||
| Organism | Escherichia coli strain VE-F10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2037512..2037615 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2037382..2037653 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQK65_RS09755 | 2033937..2034599 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQK65_RS09760 | 2034623..2035279 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQK65_RS09765 | 2035381..2035611 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQK65_RS09770 | 2035750..2036124 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| QQK65_RS09775 | 2036128..2037000 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| QQK65_RS09780 | 2037013..2037354 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2037382..2037653 | - | 272 | - | - | Antitoxin |
| - | 2037512..2037615 | + | 104 | - | - | Toxin |
| QQK65_RS09785 | 2037750..2038406 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| QQK65_RS09790 | 2038407..2038598 | - | 192 | WP_001313035.1 | YebW family protein | - |
| QQK65_RS09795 | 2038703..2038939 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQK65_RS09800 | 2039057..2040496 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T44191 NZ_AP027946:2037512-2037615 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT44191 NZ_AP027946:c2037653-2037382 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
