Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2996471..2996739 | Replicon | chromosome |
| Accession | NZ_AP027926 | ||
| Organism | Escherichia fergusonii strain 30038 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2996509..2996612 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2996471..2996739 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE84_RS14650 | 2993628..2995067 | + | 1440 | WP_181198938.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QUE84_RS14655 | 2995186..2995422 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QUE84_RS14660 | 2995527..2995718 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QUE84_RS14665 | 2995719..2996375 | - | 657 | WP_223689581.1 | protein-serine/threonine phosphatase | - |
| - | 2996471..2996739 | + | 269 | - | - | Antitoxin |
| - | 2996509..2996612 | - | 104 | - | - | Toxin |
| QUE84_RS14670 | 2996769..2997110 | - | 342 | WP_000976177.1 | YebY family protein | - |
| QUE84_RS14675 | 2997122..2997994 | - | 873 | WP_000928496.1 | copper homeostasis membrane protein CopD | - |
| QUE84_RS14680 | 2997997..2998371 | - | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| QUE84_RS14685 | 2998510..2998740 | + | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| QUE84_RS14690 | 2998847..2999503 | + | 657 | WP_169710527.1 | carbon-nitrogen hydrolase family protein | - |
| QUE84_RS14695 | 2999527..3000189 | + | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T44164 NZ_AP027926:c2996612-2996509 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT44164 NZ_AP027926:2996471-2996739 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGTTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGTTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
