Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-YefM
Location 3287580..3288121 Replicon chromosome
Accession NZ_AP027735
Organism Barrientosiimonas endolithica strain NBRC 110608

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QUE40_RS16575 Protein ID WP_289231659.1
Coordinates 3287580..3287855 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QUE40_RS16580 Protein ID WP_289231660.1
Coordinates 3287852..3288121 (-) Length 90 a.a.

Genomic Context

QUE40_RS16545QUE40_RS16560QUE40_RS16565QUE40_RS16570QUE40_RS16610QUE40_RS16550QUE40_RS16555QUE40_RS16575QUE40_RS16580QUE40_RS16585QUE40_RS16590QUE40_RS16595QUE40_RS16600QUE40_RS16605QUE40_RS16615
Location: 3282747..3283691 (945 bp)
Type: Others
Protein ID: WP_142007032.1
Location: 3285678..3286693 (1016 bp)
Type: Others
Protein ID: Protein_3258
Location: 3286778..3287215 (438 bp)
Type: Others
Protein ID: WP_289231657.1
Location: 3287212..3287535 (324 bp)
Type: Others
Protein ID: WP_289231658.1
Location: 3291105..3291593 (489 bp)
Type: Others
Protein ID: WP_289231664.1
Location: 3283720..3284373 (654 bp)
Type: Others
Protein ID: WP_142007033.1
Location: 3284439..3285536 (1098 bp)
Type: Others
Protein ID: WP_289231656.1
Location: 3287580..3287855 (276 bp)
Type: Toxin
Protein ID: WP_289231659.1
Location: 3287852..3288121 (270 bp)
Type: Antitoxin
Protein ID: WP_289231660.1
Location: 3288185..3289210 (1026 bp)
Type: Others
Protein ID: WP_289231661.1
Location: 3289207..3289653 (447 bp)
Type: Others
Protein ID: WP_289231662.1
Location: 3289698..3290090 (393 bp)
Type: Others
Protein ID: WP_289231663.1
Location: 3290087..3290335 (249 bp)
Type: Others
Protein ID: WP_142007043.1
Location: 3290456..3291016 (561 bp)
Type: Others
Protein ID: WP_142007044.1
Location: 3291584..3292003 (420 bp)
Type: Others
Protein ID: WP_142007046.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QUE40_RS16545 (GCM10025872_34340)3282747..3283691+945WP_142007032.1WYL domain-containing protein-
QUE40_RS16550 (GCM10025872_34350)3283720..3284373-654WP_142007033.1NAD(P)H-binding protein-
QUE40_RS16555 (GCM10025872_34360)3284439..3285536-1098WP_289231656.1crosslink repair DNA glycosylase YcaQ family protein-
QUE40_RS165603285678..3286693+1016Protein_3258LLM class flavin-dependent oxidoreductase-
QUE40_RS16565 (GCM10025872_34390)3286778..3287215+438WP_289231657.1SRPBCC domain-containing protein-
QUE40_RS16570 (GCM10025872_34400)3287212..3287535+324WP_289231658.1metalloregulator ArsR/SmtB family transcription factor-
QUE40_RS16575 (GCM10025872_34410)3287580..3287855-276WP_289231659.1type II toxin-antitoxin system RelE/ParE family toxinToxin
QUE40_RS16580 (GCM10025872_34420)3287852..3288121-270WP_289231660.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
QUE40_RS16585 (GCM10025872_34430)3288185..3289210-1026WP_289231661.1aldo/keto reductase-
QUE40_RS16590 (GCM10025872_34440)3289207..3289653-447WP_289231662.1MerR family transcriptional regulator-
QUE40_RS16595 (GCM10025872_34450)3289698..3290090-393WP_289231663.1type II toxin-antitoxin system VapC family toxin-
QUE40_RS16600 (GCM10025872_34460)3290087..3290335-249WP_142007043.1type II toxin-antitoxin system VapB family antitoxin-
QUE40_RS16605 (GCM10025872_34470)3290456..3291016-561WP_142007044.1YceI family protein-
QUE40_RS16610 (GCM10025872_34480)3291105..3291593+489WP_289231664.1MarR family transcriptional regulator-
QUE40_RS16615 (GCM10025872_34490)3291584..3292003-420WP_142007046.1VOC family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(14-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10564.08 Da        Isoelectric Point: 10.5554

>T44145 WP_289231659.1 NZ_AP027735:c3287855-3287580 [Barrientosiimonas endolithica]
VTESGWRVELAPGAIRSLGQLPEKVSSAIVEFVTRTLPSNPRRLSEPLRFELEGWHVARRGDYRVIVEIHEDQRVLLIGR
IEHRAHAYRQR

Download         Length: 276 bp

>T44145 NZ_AP027735:c3287855-3287580 [Barrientosiimonas endolithica]
GTGACCGAATCGGGCTGGCGTGTCGAGCTCGCTCCCGGGGCGATCCGGTCGCTGGGCCAGCTGCCCGAGAAGGTCTCGTC
CGCGATCGTGGAGTTCGTGACGCGCACCCTCCCCAGCAACCCTCGTCGACTGTCAGAGCCCTTGCGGTTCGAGCTGGAGG
GTTGGCACGTTGCTCGTCGGGGCGACTATCGGGTGATCGTCGAGATCCACGAAGACCAGCGGGTGCTTCTGATCGGTCGC
ATCGAGCACCGTGCGCATGCCTATCGACAGCGTTGA

Antitoxin


Download         Length: 90 a.a.        Molecular weight: 9571.67 Da        Isoelectric Point: 4.8210

>AT44145 WP_289231660.1 NZ_AP027735:c3288121-3287852 [Barrientosiimonas endolithica]
MRSVALSEAKDKLSSLVDEAASTHEIIRITKHGHPAAVLMSADDLESLHETLRVLSTPGAVDELNQARVDFASGESVSGD
ELRQRYGLA

Download         Length: 270 bp

>AT44145 NZ_AP027735:c3288121-3287852 [Barrientosiimonas endolithica]
ATGAGGTCTGTGGCGCTGAGTGAGGCGAAAGACAAGTTGTCGTCTCTGGTCGACGAGGCGGCGAGCACTCACGAGATCAT
CCGCATCACCAAGCACGGGCACCCGGCTGCGGTGCTGATGTCGGCCGACGACCTGGAGTCGTTGCACGAGACGCTCCGGG
TGCTGTCCACGCCCGGCGCGGTCGACGAGCTCAACCAGGCTCGCGTCGACTTCGCGTCGGGCGAATCGGTGAGTGGGGAC
GAGCTGCGTCAGCGATACGGGTTGGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References