Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 2657722..2658343 Replicon chromosome
Accession NZ_AP027735
Organism Barrientosiimonas endolithica strain NBRC 110608

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QUE40_RS13500 Protein ID WP_289231307.1
Coordinates 2657957..2658343 (+) Length 129 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QUE40_RS13495 Protein ID WP_142006222.1
Coordinates 2657722..2657955 (+) Length 78 a.a.

Genomic Context

QUE40_RS13495QUE40_RS13500QUE40_RS13510QUE40_RS13530QUE40_RS13475QUE40_RS13480QUE40_RS13485QUE40_RS13490QUE40_RS13505QUE40_RS13515QUE40_RS13520QUE40_RS13525
Location: 2657722..2657955 (234 bp)
Type: Antitoxin
Protein ID: WP_142006222.1
Location: 2657957..2658343 (387 bp)
Type: Toxin
Protein ID: WP_289231307.1
Location: 2660164..2660745 (582 bp)
Type: Others
Protein ID: WP_289231308.1
Location: 2662100..2662357 (258 bp)
Type: Others
Protein ID: WP_142006229.1
Location: 2652993..2654699 (1707 bp)
Type: Others
Protein ID: WP_289231304.1
Location: 2654696..2655469 (774 bp)
Type: Others
Protein ID: WP_289231305.1
Location: 2655367..2656308 (942 bp)
Type: Others
Protein ID: WP_289231306.1
Location: 2656529..2657650 (1122 bp)
Type: Others
Protein ID: WP_142006220.1
Location: 2658499..2660025 (1527 bp)
Type: Others
Protein ID: WP_142006223.1
Location: 2660933..2661178 (246 bp)
Type: Others
Protein ID: WP_289231309.1
Location: 2661175..2661300 (126 bp)
Type: Others
Protein ID: WP_289233089.1
Location: 2661258..2661668 (411 bp)
Type: Others
Protein ID: WP_289231310.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QUE40_RS13475 (GCM10025872_27930)2652993..2654699-1707WP_289231304.1GMC family oxidoreductase-
QUE40_RS13480 (GCM10025872_27940)2654696..2655469-774WP_289231305.1aldehyde dehydrogenase family protein-
QUE40_RS13485 (GCM10025872_27950)2655367..2656308-942WP_289231306.1aldehyde dehydrogenase family protein-
QUE40_RS13490 (GCM10025872_27960)2656529..2657650-1122WP_142006220.1GuaB3 family IMP dehydrogenase-related protein-
QUE40_RS13495 (GCM10025872_27970)2657722..2657955+234WP_142006222.1antitoxinAntitoxin
QUE40_RS13500 (GCM10025872_27980)2657957..2658343+387WP_289231307.1type II toxin-antitoxin system VapC family toxinToxin
QUE40_RS13505 (GCM10025872_27990)2658499..2660025-1527WP_142006223.1IMP dehydrogenase-
QUE40_RS13510 (GCM10025872_28000)2660164..2660745+582WP_289231308.1hypothetical protein-
QUE40_RS135152660933..2661178-246WP_289231309.1hypothetical protein-
QUE40_RS135202661175..2661300-126WP_289233089.1sigma factor-like helix-turn-helix DNA-binding protein-
QUE40_RS13525 (GCM10025872_28010)2661258..2661668-411WP_289231310.1sigma factor-
QUE40_RS13530 (GCM10025872_28020)2662100..2662357+258WP_142006229.1RNA-binding S4 domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Pae0151-like, PIN domain

(3-120)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 13495.52 Da        Isoelectric Point: 5.6741

>T44144 WP_289231307.1 NZ_AP027735:2657957-2658343 [Barrientosiimonas endolithica]
VLVIDASALVLAVVDTTSRGAAVRQQLLSGVAAPHLVDAECGQALRGLVHRGVLPADRAATSLAAARDLVVQRYPVAPLQ
SRAWELRDSLSFYDATYVALAEVLDARLLTADRRLATAPGPECPIDLA

Download         Length: 387 bp

>T44144 NZ_AP027735:2657957-2658343 [Barrientosiimonas endolithica]
GTGCTCGTCATCGACGCCTCCGCCCTGGTCCTGGCCGTCGTCGACACCACGAGCCGCGGCGCAGCCGTGCGCCAGCAGCT
CCTGTCCGGCGTCGCCGCCCCGCACCTCGTCGACGCGGAGTGCGGTCAGGCGTTGCGCGGGCTCGTCCACCGCGGGGTGC
TGCCCGCCGACCGAGCCGCCACCTCGCTGGCCGCGGCGCGCGACCTCGTCGTCCAGCGCTACCCCGTCGCCCCGCTGCAG
TCCAGAGCCTGGGAGCTGCGCGACAGCCTCAGCTTCTACGACGCGACCTACGTCGCGCTCGCCGAGGTGCTCGACGCGCG
ACTTCTCACCGCCGACCGACGGCTCGCGACCGCGCCCGGCCCCGAGTGCCCCATCGACCTCGCCTGA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8742.90 Da        Isoelectric Point: 4.7872

>AT44144 WP_142006222.1 NZ_AP027735:2657722-2657955 [Barrientosiimonas endolithica]
MALIQIRDVPEDVYETIRRRARRSGQSIQAYMLARTVEVGRRPEPDEVVQALEDDLAGRPPLTLDVNQVLAARDADR

Download         Length: 234 bp

>AT44144 NZ_AP027735:2657722-2657955 [Barrientosiimonas endolithica]
ATGGCCCTGATCCAGATCCGCGACGTGCCCGAGGACGTCTACGAGACGATCCGCCGCCGGGCGCGCCGGTCGGGCCAGTC
GATCCAGGCGTACATGCTCGCCCGGACGGTCGAGGTGGGCCGACGGCCCGAGCCCGACGAGGTCGTGCAAGCCCTCGAGG
ACGACCTCGCCGGTCGCCCGCCGCTGACCCTCGACGTCAACCAGGTGCTCGCCGCGCGCGACGCCGACCGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References