Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1999298..1999569 | Replicon | chromosome |
| Accession | NZ_AP027445 | ||
| Organism | Escherichia coli strain EC291 isolate EC291 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1999428..1999531 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1999298..1999569 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE55_RS11535 | 1995854..1996516 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QUE55_RS11540 | 1996540..1997196 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE55_RS11545 | 1997298..1997528 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE55_RS11550 | 1997667..1998041 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| QUE55_RS11555 | 1998045..1998917 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| QUE55_RS11560 | 1998930..1999271 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1999298..1999569 | - | 272 | - | - | Antitoxin |
| - | 1999428..1999531 | + | 104 | - | - | Toxin |
| QUE55_RS11565 | 1999666..2000322 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QUE55_RS11570 | 2000323..2000514 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QUE55_RS11575 | 2000619..2000855 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QUE55_RS11580 | 2000973..2002412 | - | 1440 | WP_149506150.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T44113 NZ_AP027445:1999428-1999531 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT44113 NZ_AP027445:c1999569-1999298 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
