Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 622957..623483 | Replicon | chromosome |
| Accession | NZ_AP027440 | ||
| Organism | Escherichia coli strain EC556 isolate EC556 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | QUE77_RS04635 | Protein ID | WP_000323025.1 |
| Coordinates | 623196..623483 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | QUE77_RS04630 | Protein ID | WP_000534858.1 |
| Coordinates | 622957..623196 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE77_RS04590 (617974) | 617974..618159 | + | 186 | Protein_637 | hypothetical protein | - |
| QUE77_RS04595 (618157) | 618157..618297 | + | 141 | Protein_638 | DUF977 family protein | - |
| QUE77_RS04600 (618294) | 618294..618783 | + | 490 | Protein_639 | class I SAM-dependent methyltransferase | - |
| QUE77_RS04605 (619261) | 619261..619682 | + | 422 | Protein_640 | hypothetical protein | - |
| QUE77_RS04610 (620338) | 620338..621360 | + | 1023 | Protein_641 | ISNCY family transposase | - |
| QUE77_RS04615 (621481) | 621481..621630 | + | 150 | WP_011443592.1 | protein YdfW | - |
| QUE77_RS04620 (622092) | 622092..622424 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QUE77_RS04625 (622627) | 622627..622932 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QUE77_RS04630 (622957) | 622957..623196 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| QUE77_RS04635 (623196) | 623196..623483 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| QUE77_RS04640 (623555) | 623555..623710 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QUE77_RS04645 (623927) | 623927..624178 | + | 252 | WP_000980994.1 | protein Rem | - |
| QUE77_RS04650 (624245) | 624245..624523 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QUE77_RS04655 (624525) | 624525..625574 | + | 1050 | WP_063085032.1 | DUF968 domain-containing protein | - |
| QUE77_RS04660 (625588) | 625588..626340 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QUE77_RS04665 (626618) | 626618..626707 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QUE77_RS04670 (626762) | 626762..626974 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QUE77_RS04675 (627275) | 627275..627490 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QUE77_RS04680 (627854) | 627854..628024 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QUE77_RS04685 (628244) | 628244..628459 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 599668..639691 | 40023 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T44082 WP_000323025.1 NZ_AP027440:623196-623483 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T44082 NZ_AP027440:623196-623483 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT44082 WP_000534858.1 NZ_AP027440:622957-623196 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT44082 NZ_AP027440:622957-623196 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|