Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 306654..306925 | Replicon | chromosome |
| Accession | NZ_AP027440 | ||
| Organism | Escherichia coli strain EC556 isolate EC556 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 306784..306887 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 306654..306925 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE77_RS02930 | 303209..303871 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QUE77_RS02935 | 303895..304551 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE77_RS02940 | 304653..304883 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE77_RS02945 | 305022..305396 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| QUE77_RS02950 | 305400..306272 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QUE77_RS02955 | 306285..306626 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 306654..306925 | - | 272 | - | - | Antitoxin |
| - | 306784..306887 | + | 104 | - | - | Toxin |
| QUE77_RS02960 | 307022..307678 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| QUE77_RS02965 | 307679..307870 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QUE77_RS02970 | 307975..308211 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QUE77_RS02975 | 308329..309768 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 282871..328142 | 45271 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T44074 NZ_AP027440:306784-306887 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT44074 NZ_AP027440:c306925-306654 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
