Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 621240..621766 | Replicon | chromosome |
| Accession | NZ_AP027436 | ||
| Organism | Escherichia coli strain EC571 isolate EC571 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | QUE57_RS04610 | Protein ID | WP_000323025.1 |
| Coordinates | 621479..621766 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | QUE57_RS04605 | Protein ID | WP_000534858.1 |
| Coordinates | 621240..621479 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE57_RS04565 (616257) | 616257..616442 | + | 186 | Protein_635 | hypothetical protein | - |
| QUE57_RS04570 (616440) | 616440..616580 | + | 141 | Protein_636 | DUF977 family protein | - |
| QUE57_RS04575 (616577) | 616577..617066 | + | 490 | Protein_637 | class I SAM-dependent methyltransferase | - |
| QUE57_RS04580 (617544) | 617544..617965 | + | 422 | Protein_638 | hypothetical protein | - |
| QUE57_RS04585 (618621) | 618621..619643 | + | 1023 | Protein_639 | ISNCY family transposase | - |
| QUE57_RS04590 (619764) | 619764..619913 | + | 150 | WP_011443592.1 | protein YdfW | - |
| QUE57_RS04595 (620375) | 620375..620707 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QUE57_RS04600 (620910) | 620910..621215 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QUE57_RS04605 (621240) | 621240..621479 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| QUE57_RS04610 (621479) | 621479..621766 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| QUE57_RS04615 (621838) | 621838..621993 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QUE57_RS04620 (622210) | 622210..622461 | + | 252 | WP_000980994.1 | protein Rem | - |
| QUE57_RS04625 (622528) | 622528..622806 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QUE57_RS04630 (622808) | 622808..623857 | + | 1050 | WP_063085032.1 | DUF968 domain-containing protein | - |
| QUE57_RS04635 (623871) | 623871..624623 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QUE57_RS04640 (624901) | 624901..624990 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QUE57_RS04645 (625045) | 625045..625257 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QUE57_RS04650 (625558) | 625558..625773 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QUE57_RS04655 (626137) | 626137..626307 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QUE57_RS04660 (626527) | 626527..626742 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 597951..635322 | 37371 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T44052 WP_000323025.1 NZ_AP027436:621479-621766 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T44052 NZ_AP027436:621479-621766 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT44052 WP_000534858.1 NZ_AP027436:621240-621479 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT44052 NZ_AP027436:621240-621479 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|