Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 304937..305208 | Replicon | chromosome |
| Accession | NZ_AP027436 | ||
| Organism | Escherichia coli strain EC571 isolate EC571 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 305067..305170 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 304937..305208 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE57_RS02905 | 301492..302154 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QUE57_RS02910 | 302178..302834 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE57_RS02915 | 302936..303166 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE57_RS02920 | 303305..303679 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| QUE57_RS02925 | 303683..304555 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QUE57_RS02930 | 304568..304909 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 304937..305208 | - | 272 | - | - | Antitoxin |
| - | 305067..305170 | + | 104 | - | - | Toxin |
| QUE57_RS02935 | 305305..305961 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| QUE57_RS02940 | 305962..306153 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QUE57_RS02945 | 306258..306494 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QUE57_RS02950 | 306612..308051 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 297627..326425 | 28798 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T44044 NZ_AP027436:305067-305170 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT44044 NZ_AP027436:c305208-304937 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
