Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1073669..1073940 | Replicon | chromosome |
| Accession | NZ_AP027432 | ||
| Organism | Escherichia coli strain EC581 isolate EC581 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1073707..1073810 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1073669..1073940 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE97_RS07875 | 1070826..1072265 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QUE97_RS07880 | 1072383..1072619 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QUE97_RS07885 | 1072724..1072915 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QUE97_RS07890 | 1072916..1073572 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 1073669..1073940 | + | 272 | - | - | Antitoxin |
| - | 1073707..1073810 | - | 104 | - | - | Toxin |
| QUE97_RS07895 | 1073968..1074309 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QUE97_RS07900 | 1074322..1075194 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QUE97_RS07905 | 1075198..1075572 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| QUE97_RS07910 | 1075711..1075941 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE97_RS07915 | 1076043..1076699 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE97_RS07920 | 1076723..1077385 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T44016 NZ_AP027432:c1073810-1073707 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT44016 NZ_AP027432:1073669-1073940 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
