Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 757111..757637 | Replicon | chromosome |
| Accession | NZ_AP027432 | ||
| Organism | Escherichia coli strain EC581 isolate EC581 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | QUE97_RS06215 | Protein ID | WP_000323025.1 |
| Coordinates | 757111..757398 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | QUE97_RS06220 | Protein ID | WP_000534858.1 |
| Coordinates | 757398..757637 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE97_RS06165 (752135) | 752135..752350 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QUE97_RS06170 (752570) | 752570..752740 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QUE97_RS06175 (753104) | 753104..753319 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QUE97_RS06180 (753620) | 753620..753832 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QUE97_RS06185 (753887) | 753887..753976 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| QUE97_RS06190 (754254) | 754254..755006 | - | 753 | WP_001047135.1 | antitermination protein | - |
| QUE97_RS06195 (755020) | 755020..756069 | - | 1050 | WP_063085032.1 | DUF968 domain-containing protein | - |
| QUE97_RS06200 (756071) | 756071..756349 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| QUE97_RS06205 (756416) | 756416..756667 | - | 252 | WP_000980994.1 | protein Rem | - |
| QUE97_RS06210 (756884) | 756884..757039 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QUE97_RS06215 (757111) | 757111..757398 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| QUE97_RS06220 (757398) | 757398..757637 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| QUE97_RS06225 (757662) | 757662..757967 | + | 306 | WP_001326990.1 | protein YdfV | - |
| QUE97_RS06230 (758170) | 758170..758502 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QUE97_RS06235 (758964) | 758964..759113 | - | 150 | WP_011443592.1 | protein YdfW | - |
| QUE97_RS06240 (759234) | 759234..760256 | - | 1023 | Protein_756 | ISNCY family transposase | - |
| QUE97_RS06245 (761046) | 761046..761333 | - | 288 | Protein_757 | hypothetical protein | - |
| QUE97_RS06250 (761811) | 761811..762300 | - | 490 | Protein_758 | class I SAM-dependent methyltransferase | - |
| QUE97_RS06255 (762297) | 762297..762437 | - | 141 | Protein_759 | DUF977 family protein | - |
| QUE97_RS06260 (762435) | 762435..762620 | - | 186 | Protein_760 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 746174..770379 | 24205 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T44015 WP_000323025.1 NZ_AP027432:c757398-757111 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T44015 NZ_AP027432:c757398-757111 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT44015 WP_000534858.1 NZ_AP027432:c757637-757398 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT44015 NZ_AP027432:c757637-757398 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|