Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 862108..862379 | Replicon | chromosome |
| Accession | NZ_AP027417 | ||
| Organism | Escherichia coli strain EC361 isolate EC361 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 862146..862249 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 862108..862379 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUF17_RS07510 | 859265..860704 | + | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QUF17_RS07515 | 860822..861058 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QUF17_RS07520 | 861163..861354 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QUF17_RS07525 | 861355..862011 | - | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| - | 862108..862379 | + | 272 | - | - | Antitoxin |
| - | 862146..862249 | - | 104 | - | - | Toxin |
| QUF17_RS07530 | 862407..862748 | - | 342 | WP_000976492.1 | YebY family protein | - |
| QUF17_RS07535 | 862761..863633 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| QUF17_RS07540 | 863637..864011 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QUF17_RS07545 | 864150..864380 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUF17_RS07550 | 864482..865138 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUF17_RS07555 | 865162..865824 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43876 NZ_AP027417:c862249-862146 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT43876 NZ_AP027417:862108-862379 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
