Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4048883..4049154 | Replicon | chromosome |
| Accession | NZ_AP027411 | ||
| Organism | Escherichia coli strain EC521 isolate EC521 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4049013..4049116 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4048883..4049154 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE69_RS20210 | 4045438..4046100 | - | 663 | WP_213831593.1 | exodeoxyribonuclease X | - |
| QUE69_RS20215 | 4046124..4046780 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE69_RS20220 | 4046882..4047112 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE69_RS20225 | 4047251..4047625 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QUE69_RS20230 | 4047629..4048501 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| QUE69_RS20235 | 4048514..4048855 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 4048883..4049154 | - | 272 | - | - | Antitoxin |
| - | 4049013..4049116 | + | 104 | - | - | Toxin |
| QUE69_RS20240 | 4049251..4049907 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QUE69_RS20245 | 4049908..4050099 | - | 192 | WP_000457842.1 | YebW family protein | - |
| QUE69_RS20250 | 4050204..4050440 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QUE69_RS20255 | 4050558..4051997 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43850 NZ_AP027411:4049013-4049116 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT43850 NZ_AP027411:c4049154-4048883 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
