Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2401139..2401410 | Replicon | chromosome |
| Accession | NZ_AP027408 | ||
| Organism | Escherichia coli strain EC507 isolate EC507 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2401177..2401280 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2401139..2401410 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE45_RS12880 | 2398296..2399735 | + | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QUE45_RS12885 | 2399853..2400089 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QUE45_RS12890 | 2400194..2400385 | + | 192 | WP_001313035.1 | YebW family protein | - |
| QUE45_RS12895 | 2400386..2401042 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 2401139..2401410 | + | 272 | - | - | Antitoxin |
| - | 2401177..2401280 | - | 104 | - | - | Toxin |
| QUE45_RS12900 | 2401438..2401779 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QUE45_RS12905 | 2401792..2402664 | - | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| QUE45_RS12910 | 2402668..2403042 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| QUE45_RS12915 | 2403181..2403411 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE45_RS12920 | 2403513..2404169 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE45_RS12925 | 2404193..2404855 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43824 NZ_AP027408:c2401280-2401177 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT43824 NZ_AP027408:2401139-2401410 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
