Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | TsxAB/Xre(antitoxin) |
| Location | 6123..6624 | Replicon | plasmid pEC507_2 |
| Accession | NZ_AP027406 | ||
| Organism | Escherichia coli strain EC507 isolate EC507 | ||
Toxin (Protein)
| Gene name | TsxA | Uniprot ID | H1ZXU8 |
| Locus tag | QUE45_RS00360 | Protein ID | WP_000702247.1 |
| Coordinates | 6123..6383 (+) | Length | 87 a.a. |
Antitoxin (Protein)
| Gene name | TsxB | Uniprot ID | - |
| Locus tag | QUE45_RS00365 | Protein ID | WP_001132407.1 |
| Coordinates | 6373..6624 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE45_RS00315 | 1730..1920 | + | 191 | Protein_1 | hypothetical protein | - |
| QUE45_RS00320 (MUTS3_00650) | 2570..2722 | + | 153 | Protein_2 | DUF5431 family protein | - |
| QUE45_RS00325 | 2667..2789 | + | 123 | WP_223170659.1 | type I toxin-antitoxin system Hok family toxin | - |
| QUE45_RS00330 (MUTS3_00660) | 2939..3535 | + | 597 | WP_000125165.1 | ProQ/FINO family protein | - |
| QUE45_RS00335 (MUTS3_00670) | 3553..3837 | - | 285 | WP_001162371.1 | hypothetical protein | - |
| QUE45_RS00340 (MUTS3_00680) | 3911..4576 | - | 666 | WP_000532148.1 | division plane positioning ATPase MipZ | - |
| QUE45_RS00345 (MUTS3_00690) | 5176..5499 | + | 324 | WP_000427403.1 | hypothetical protein | - |
| QUE45_RS00350 (MUTS3_00700) | 5541..5750 | + | 210 | WP_000866036.1 | hypothetical protein | - |
| QUE45_RS00355 (MUTS3_00710) | 5847..6071 | + | 225 | WP_000814381.1 | hypothetical protein | - |
| QUE45_RS00360 (MUTS3_00720) | 6123..6383 | + | 261 | WP_000702247.1 | hypothetical protein | Toxin |
| QUE45_RS00365 (MUTS3_00730) | 6373..6624 | + | 252 | WP_001132407.1 | transcriptional regulator | Antitoxin |
| QUE45_RS00370 (MUTS3_00740) | 7174..7452 | + | 279 | WP_000545938.1 | hypothetical protein | - |
| QUE45_RS00375 (MUTS3_00760) | 7872..8138 | + | 267 | WP_000681608.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| QUE45_RS00380 (MUTS3_00770) | 8245..8688 | - | 444 | WP_000068545.1 | hypothetical protein | - |
| QUE45_RS00385 (MUTS3_00780) | 8985..9167 | + | 183 | WP_000833470.1 | type II toxin-antitoxin system HicA family toxin | - |
| QUE45_RS00390 (MUTS3_00790) | 9192..9629 | + | 438 | WP_000466318.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| QUE45_RS00395 (MUTS3_00800) | 9760..10086 | - | 327 | WP_063078684.1 | hypothetical protein | - |
| QUE45_RS00400 (MUTS3_00810) | 10106..10813 | - | 708 | WP_021503228.1 | hypothetical protein | - |
| QUE45_RS00405 (MUTS3_00820) | 10815..11567 | - | 753 | WP_000797966.1 | conjugal transfer protein TraL | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Mobilizable plasmid | mcr-1.1 | - | 1..61975 | 61975 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 87 a.a. Molecular weight: 9817.29 Da Isoelectric Point: 10.0665
>T43807 WP_000702247.1 NZ_AP027406:6123-6383 [Escherichia coli]
MKIRKGDRQYYLNKEGDTFHLVKRVKTFSKSATLGKTKATVKTVADLVFHEKAFDTIDFASDGLRENDKEIVSMMIQEMS
EGKNAK
MKIRKGDRQYYLNKEGDTFHLVKRVKTFSKSATLGKTKATVKTVADLVFHEKAFDTIDFASDGLRENDKEIVSMMIQEMS
EGKNAK
Download Length: 261 bp
>T43807 NZ_AP027406:6123-6383 [Escherichia coli]
ATGAAGATAAGAAAAGGTGACAGACAATATTATCTGAATAAAGAAGGTGATACGTTTCATCTGGTGAAGCGAGTAAAAAC
TTTTTCTAAGTCTGCGACTTTAGGAAAAACGAAAGCAACGGTGAAAACTGTTGCCGATCTTGTTTTTCATGAGAAGGCAT
TCGACACTATCGACTTTGCCAGCGACGGATTAAGAGAGAATGATAAAGAAATTGTTTCTATGATGATTCAGGAAATGAGT
GAGGGAAAAAATGCCAAATGA
ATGAAGATAAGAAAAGGTGACAGACAATATTATCTGAATAAAGAAGGTGATACGTTTCATCTGGTGAAGCGAGTAAAAAC
TTTTTCTAAGTCTGCGACTTTAGGAAAAACGAAAGCAACGGTGAAAACTGTTGCCGATCTTGTTTTTCATGAGAAGGCAT
TCGACACTATCGACTTTGCCAGCGACGGATTAAGAGAGAATGATAAAGAAATTGTTTCTATGATGATTCAGGAAATGAGT
GAGGGAAAAAATGCCAAATGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9404.77 Da Isoelectric Point: 9.8120
>AT43807 WP_001132407.1 NZ_AP027406:6373-6624 [Escherichia coli]
MPNENTPENIKRLRQKIGLTQKECAEIFSMSPRTWRRKEEPVGTASGTALTPVEFKFLLLLAGEHPDYVLCKRNKKNSDS
GSN
MPNENTPENIKRLRQKIGLTQKECAEIFSMSPRTWRRKEEPVGTASGTALTPVEFKFLLLLAGEHPDYVLCKRNKKNSDS
GSN
Download Length: 252 bp
>AT43807 NZ_AP027406:6373-6624 [Escherichia coli]
ATGCCAAATGAAAACACACCAGAAAACATTAAACGTCTGCGGCAAAAAATTGGCCTGACACAGAAAGAATGTGCCGAAAT
ATTTAGCATGAGTCCGCGTACCTGGCGTCGCAAAGAAGAACCTGTCGGAACTGCAAGCGGTACAGCACTTACACCAGTAG
AGTTTAAATTTCTTCTGCTTTTAGCTGGAGAACACCCTGATTATGTACTTTGTAAAAGGAATAAAAAGAATTCTGATTCT
GGAAGTAATTAA
ATGCCAAATGAAAACACACCAGAAAACATTAAACGTCTGCGGCAAAAAATTGGCCTGACACAGAAAGAATGTGCCGAAAT
ATTTAGCATGAGTCCGCGTACCTGGCGTCGCAAAGAAGAACCTGTCGGAACTGCAAGCGGTACAGCACTTACACCAGTAG
AGTTTAAATTTCTTCTGCTTTTAGCTGGAGAACACCCTGATTATGTACTTTGTAAAAGGAATAAAAAGAATTCTGATTCT
GGAAGTAATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|