Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2690576..2690847 | Replicon | chromosome |
| Accession | NZ_AP027404 | ||
| Organism | Escherichia coli strain EC416 isolate EC416 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2690706..2690809 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2690576..2690847 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE37_RS13960 | 2687131..2687793 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QUE37_RS13965 | 2687817..2688473 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE37_RS13970 | 2688575..2688805 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE37_RS13975 | 2688944..2689318 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QUE37_RS13980 | 2689322..2690194 | + | 873 | WP_000879275.1 | copper homeostasis membrane protein CopD | - |
| QUE37_RS13985 | 2690207..2690548 | + | 342 | WP_096323477.1 | YebY family protein | - |
| - | 2690576..2690847 | - | 272 | - | - | Antitoxin |
| - | 2690706..2690809 | + | 104 | - | - | Toxin |
| QUE37_RS13990 | 2690944..2691600 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QUE37_RS13995 | 2691601..2691792 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QUE37_RS14000 | 2691897..2692133 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QUE37_RS14005 | 2692251..2693690 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43793 NZ_AP027404:2690706-2690809 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT43793 NZ_AP027404:c2690847-2690576 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
