Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1942200..1942345 | Replicon | chromosome |
| Accession | NZ_AP027263 | ||
| Organism | Klebsiella pneumoniae strain TA8711 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1942236..1942338 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1942200..1942345 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE17_RS09500 (KPTA8711_18460) | 1937330..1939390 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QUE17_RS09505 (KPTA8711_18470) | 1939394..1940053 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| QUE17_RS09510 (KPTA8711_18480) | 1940132..1940362 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QUE17_RS09515 (KPTA8711_18490) | 1940475..1940849 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QUE17_RS09520 (KPTA8711_18500) | 1940853..1941722 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| QUE17_RS09525 (KPTA8711_18510) | 1941739..1942077 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1942200..1942345 | - | 146 | - | - | Antitoxin |
| - | 1942236..1942338 | + | 103 | - | - | Toxin |
| QUE17_RS09530 | 1942713..1942856 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QUE17_RS09535 (KPTA8711_18520) | 1942961..1943929 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QUE17_RS09540 (KPTA8711_18530) | 1944086..1944739 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QUE17_RS09545 (KPTA8711_18540) | 1944736..1944927 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QUE17_RS09550 (KPTA8711_18550) | 1945025..1945264 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QUE17_RS09555 (KPTA8711_18560) | 1945380..1946813 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T43671 NZ_AP027263:1942236-1942338 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT43671 NZ_AP027263:c1942345-1942200 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
