Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2032447..2032718 | Replicon | chromosome |
| Accession | NZ_AP027258 | ||
| Organism | Escherichia coli strain JNE151685 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2032485..2032588 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2032447..2032718 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE29_RS10050 | 2029604..2031043 | + | 1440 | WP_077897026.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QUE29_RS10055 | 2031161..2031397 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QUE29_RS10060 | 2031502..2031693 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QUE29_RS10065 | 2031694..2032350 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 2032447..2032718 | + | 272 | - | - | Antitoxin |
| - | 2032485..2032588 | - | 104 | - | - | Toxin |
| QUE29_RS10070 | 2032746..2033087 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QUE29_RS10075 | 2033100..2033972 | - | 873 | WP_057687934.1 | copper homeostasis membrane protein CopD | - |
| QUE29_RS10080 | 2033976..2034350 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QUE29_RS10085 | 2034489..2034719 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE29_RS10090 | 2034821..2035477 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE29_RS10095 | 2035501..2036163 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43643 NZ_AP027258:c2032588-2032485 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT43643 NZ_AP027258:2032447-2032718 [Escherichia coli]
AAAGTAAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTAAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
