Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2027943..2028214 | Replicon | chromosome |
| Accession | NZ_AP027256 | ||
| Organism | Escherichia coli strain JNE141411 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2027981..2028084 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2027943..2028214 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUD91_RS09905 | 2025100..2026539 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QUD91_RS09910 | 2026657..2026893 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QUD91_RS09915 | 2026998..2027189 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QUD91_RS09920 | 2027190..2027846 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2027943..2028214 | + | 272 | - | - | Antitoxin |
| - | 2027981..2028084 | - | 104 | - | - | Toxin |
| QUD91_RS09925 | 2028242..2028583 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QUD91_RS09930 | 2028596..2029468 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| QUD91_RS09935 | 2029472..2029846 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QUD91_RS09940 | 2029985..2030215 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUD91_RS09945 | 2030317..2030973 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUD91_RS09950 | 2030997..2031659 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43615 NZ_AP027256:c2028084-2027981 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT43615 NZ_AP027256:2027943-2028214 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
