Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 261624..261895 | Replicon | chromosome |
| Accession | NZ_AP027246 | ||
| Organism | Escherichia coli strain JNE120393 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 261754..261857 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 261624..261895 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUF33_RS01355 | 258180..258842 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QUF33_RS01360 | 258866..259521 | - | 656 | Protein_263 | carbon-nitrogen hydrolase family protein YobB | - |
| QUF33_RS01365 | 259623..259853 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUF33_RS01370 | 259992..260366 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QUF33_RS01375 | 260370..261242 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QUF33_RS01380 | 261255..261596 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 261624..261895 | - | 272 | - | - | Antitoxin |
| - | 261754..261857 | + | 104 | - | - | Toxin |
| QUF33_RS01385 | 261992..262648 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QUF33_RS01390 | 262649..262840 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QUF33_RS01395 | 262945..263181 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QUF33_RS01400 | 263299..264738 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43559 NZ_AP027246:261754-261857 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT43559 NZ_AP027246:c261895-261624 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
