Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2064198..2064469 | Replicon | chromosome |
| Accession | NZ_AP027217 | ||
| Organism | Escherichia coli strain JNE170426 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2064236..2064339 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2064198..2064469 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE10_RS09965 | 2061355..2062794 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QUE10_RS09970 | 2062912..2063148 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QUE10_RS09975 | 2063253..2063444 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QUE10_RS09980 | 2063445..2064101 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2064198..2064469 | + | 272 | - | - | Antitoxin |
| - | 2064236..2064339 | - | 104 | - | - | Toxin |
| QUE10_RS09985 | 2064497..2064838 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QUE10_RS09990 | 2064851..2065723 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QUE10_RS09995 | 2065727..2066101 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| QUE10_RS10000 | 2066240..2066470 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE10_RS10005 | 2066572..2067228 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE10_RS10010 | 2067252..2067914 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43537 NZ_AP027217:c2064339-2064236 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT43537 NZ_AP027217:2064198-2064469 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
