Detailed information of TA system
Overview
TA module
| Type | V | Classification (family/domain) | ghoTS/ghoT-GhoS |
| Location | 4746605..4747102 | Replicon | chromosome |
| Accession | NZ_AP027212 | ||
| Organism | Escherichia coli strain JNE131328 | ||
Toxin (Protein)
| Gene name | ghoT | Uniprot ID | - |
| Locus tag | QUE42_RS23345 | Protein ID | WP_001173344.1 |
| Coordinates | 4746929..4747102 (+) | Length | 58 a.a. |
Antitoxin (Protein)
| Gene name | ghoS | Uniprot ID | L4JK92 |
| Locus tag | QUE42_RS23340 | Protein ID | WP_000398619.1 |
| Coordinates | 4746605..4746901 (+) | Length | 99 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE42_RS23320 (4743336) | 4743336..4744055 | - | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
| QUE42_RS23325 (4744052) | 4744052..4745683 | - | 1632 | WP_001216461.1 | sensor histidine kinase | - |
| QUE42_RS23330 (4745864) | 4745864..4746094 | + | 231 | WP_000371700.1 | 4Fe-4S mono-cluster protein YjdI | - |
| QUE42_RS23335 (4746106) | 4746106..4746378 | + | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| QUE42_RS23340 (4746605) | 4746605..4746901 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin |
| QUE42_RS23345 (4746929) | 4746929..4747102 | + | 174 | WP_001173344.1 | type V toxin-antitoxin system toxin GhoT | Toxin |
| QUE42_RS23350 (4747221) | 4747221..4748738 | - | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| QUE42_RS23355 (4748975) | 4748975..4750432 | - | 1458 | WP_000856832.1 | dipeptide/tripeptide permease DtpC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 58 a.a. Molecular weight: 6583.12 Da Isoelectric Point: 10.2288
>T43527 WP_001173344.1 NZ_AP027212:4746929-4747102 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSVFLVGITWPMSLPVALLFSLF
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSVFLVGITWPMSLPVALLFSLF
Download Length: 174 bp
>T43527 NZ_AP027212:4746929-4747102 [Escherichia coli]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGTATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGTATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG
Antitoxin
Download Length: 99 a.a. Molecular weight: 11467.97 Da Isoelectric Point: 4.1705
>AT43527 WP_000398619.1 NZ_AP027212:4746605-4746901 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK
Download Length: 297 bp
>AT43527 NZ_AP027212:4746605-4746901 [Escherichia coli]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCTTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAATT
CTTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GATTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCTTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAATT
CTTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GATTTTGACCTCAACATTATGACAGTTGATGACTATTTCCGTCAGTTTTACAAGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|