Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2554052..2554286 | Replicon | chromosome |
| Accession | NZ_AP027197 | ||
| Organism | Escherichia coli strain 02E060 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2554053..2554156 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2554052..2554286 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG97_RS13485 | 2549984..2550388 | + | 405 | Protein_2647 | recombinase RecT | - |
| QMG97_RS13490 | 2550453..2551609 | + | 1157 | WP_085948186.1 | IS3-like element IS600 family transposase | - |
| QMG97_RS13495 | 2551653..2552060 | + | 408 | Protein_2649 | recombinase RecT | - |
| QMG97_RS13500 | 2552117..2552311 | + | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| QMG97_RS13505 | 2552304..2552492 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2552310..2552488 | - | 179 | NuclAT_1 | - | - |
| - | 2552310..2552488 | - | 179 | NuclAT_1 | - | - |
| - | 2552310..2552488 | - | 179 | NuclAT_1 | - | - |
| - | 2552310..2552488 | - | 179 | NuclAT_1 | - | - |
| QMG97_RS13510 | 2552599..2552880 | + | 282 | WP_001443927.1 | excisionase | - |
| QMG97_RS13515 | 2552846..2553961 | + | 1116 | WP_001189092.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2554052..2554286 | + | 235 | - | - | Antitoxin |
| - | 2554053..2554156 | - | 104 | - | - | Toxin |
| QMG97_RS13520 | 2554314..2554655 | - | 342 | WP_000976492.1 | YebY family protein | - |
| QMG97_RS13525 | 2554668..2555540 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QMG97_RS13530 | 2555544..2555918 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QMG97_RS13535 | 2556057..2556287 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QMG97_RS13540 | 2556389..2557045 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QMG97_RS13545 | 2557069..2557731 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleG7' | 2495152..2559788 | 64636 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43450 NZ_AP027197:c2554156-2554053 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT43450 NZ_AP027197:2554052-2554286 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
