Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2264602..2265128 | Replicon | chromosome |
| Accession | NZ_AP027188 | ||
| Organism | Escherichia coli strain PV0838 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | QMG68_RS12065 | Protein ID | WP_000323025.1 |
| Coordinates | 2264602..2264889 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | QMG68_RS12070 | Protein ID | WP_000534858.1 |
| Coordinates | 2264889..2265128 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG68_RS12015 (2259626) | 2259626..2259841 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QMG68_RS12020 (2260061) | 2260061..2260231 | + | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| QMG68_RS12025 (2260595) | 2260595..2260810 | - | 216 | WP_000066483.1 | cold shock-like protein CspB | - |
| QMG68_RS12030 (2261111) | 2261111..2261323 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QMG68_RS12035 (2261378) | 2261378..2261467 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| QMG68_RS12040 (2261745) | 2261745..2262497 | - | 753 | WP_001047133.1 | antitermination protein | - |
| QMG68_RS12045 (2262511) | 2262511..2263560 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| QMG68_RS12050 (2263562) | 2263562..2263840 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| QMG68_RS12055 (2263907) | 2263907..2264158 | - | 252 | WP_000980994.1 | protein Rem | - |
| QMG68_RS12060 (2264375) | 2264375..2264530 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QMG68_RS12065 (2264602) | 2264602..2264889 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| QMG68_RS12070 (2264889) | 2264889..2265128 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| QMG68_RS12075 (2265153) | 2265153..2265458 | + | 306 | WP_001326990.1 | protein YdfV | - |
| QMG68_RS12080 (2265661) | 2265661..2265993 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| QMG68_RS12085 (2266430) | 2266430..2266579 | - | 150 | WP_180302674.1 | protein YdfW | - |
| QMG68_RS12090 (2266652) | 2266652..2267749 | - | 1098 | Protein_2366 | ISNCY family transposase | - |
| QMG68_RS12095 (2267804) | 2267804..2268223 | - | 420 | WP_001151195.1 | DUF977 family protein | - |
| QMG68_RS12100 (2268264) | 2268264..2269229 | - | 966 | WP_000054507.1 | hypothetical protein | - |
| QMG68_RS12105 (2269210) | 2269210..2269731 | - | 522 | WP_000705349.1 | toxin YdaT family protein | - |
| QMG68_RS12110 (2269715) | 2269715..2269942 | - | 228 | WP_000476993.1 | Cro/CI family transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleC | 2174696..2279256 | 104560 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T43370 WP_000323025.1 NZ_AP027188:c2264889-2264602 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T43370 NZ_AP027188:c2264889-2264602 [Escherichia coli]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT43370 WP_000534858.1 NZ_AP027188:c2265128-2264889 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT43370 NZ_AP027188:c2265128-2264889 [Escherichia coli]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|