Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1757700..1757934 | Replicon | chromosome |
| Accession | NZ_AP027159 | ||
| Organism | Escherichia coli strain 2313 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1757830..1757933 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1757700..1757934 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG94_RS08925 | 1754255..1754917 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QMG94_RS08930 | 1754941..1755597 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QMG94_RS08935 | 1755699..1755929 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QMG94_RS08940 | 1756068..1756442 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QMG94_RS08945 | 1756446..1757318 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QMG94_RS08950 | 1757331..1757672 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1757700..1757934 | - | 235 | - | - | Antitoxin |
| - | 1757830..1757933 | + | 104 | - | - | Toxin |
| QMG94_RS08955 | 1758065..1759141 | - | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| QMG94_RS08960 | 1759107..1759388 | - | 282 | WP_001443927.1 | excisionase | - |
| QMG94_RS08965 | 1759495..1759683 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 1759499..1759677 | + | 179 | NuclAT_1 | - | - |
| - | 1759499..1759677 | + | 179 | NuclAT_1 | - | - |
| - | 1759499..1759677 | + | 179 | NuclAT_1 | - | - |
| - | 1759499..1759677 | + | 179 | NuclAT_1 | - | - |
| QMG94_RS08970 | 1759676..1759870 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| QMG94_RS08975 | 1759927..1760736 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleC | 1752198..1815333 | 63135 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43093 NZ_AP027159:1757830-1757933 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT43093 NZ_AP027159:c1757934-1757700 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
