Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2068907..2069178 | Replicon | chromosome |
| Accession | NZ_AP027156 | ||
| Organism | Escherichia coli strain JNE181771 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2068945..2069048 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2068907..2069178 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUD66_RS10065 | 2066064..2067503 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QUD66_RS10070 | 2067621..2067857 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QUD66_RS10075 | 2067962..2068153 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QUD66_RS10080 | 2068154..2068810 | - | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| - | 2068907..2069178 | + | 272 | - | - | Antitoxin |
| - | 2068945..2069048 | - | 104 | - | - | Toxin |
| QUD66_RS10085 | 2069206..2069547 | - | 342 | WP_000976472.1 | YebY family protein | - |
| QUD66_RS10090 | 2069560..2070432 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| QUD66_RS10095 | 2070436..2070810 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QUD66_RS10100 | 2070949..2071179 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUD66_RS10105 | 2071281..2071937 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUD66_RS10110 | 2071961..2072623 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T43055 NZ_AP027156:c2069048-2068945 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT43055 NZ_AP027156:2068907-2069178 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
