Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 254124..254395 | Replicon | chromosome |
| Accession | NZ_AP026937 | ||
| Organism | Escherichia coli strain EC20-4B-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 254254..254357 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 254124..254395 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO845_RS01255 | 250679..251341 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OO845_RS01260 | 251365..252021 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO845_RS01265 | 252123..252353 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO845_RS01270 | 252492..252866 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| OO845_RS01275 | 252870..253742 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| OO845_RS01280 | 253755..254096 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 254124..254395 | - | 272 | - | - | Antitoxin |
| - | 254254..254357 | + | 104 | - | - | Toxin |
| OO845_RS01285 | 254492..255148 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| OO845_RS01290 | 255161..255340 | - | 180 | WP_089644822.1 | YebW family protein | - |
| OO845_RS01295 | 255445..255681 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OO845_RS01300 | 255799..257238 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42879 NZ_AP026937:254254-254357 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT42879 NZ_AP026937:c254395-254124 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
